Tuesday, Nov 14 |
 |
|
| | | | | | | | |
| 10:30AM - 11:00AM |
| Architecture |
| A Performance Comparison through Benchmarking and Modeling of Three Leading Supercomputers: Blue Gene/L, Red Storm, and Purple |
| Adolfy Hoisie, Gregory Johnson, Darren Kerbyson, Michael Lang, Scott Pakin |
| 20-21 |
| 10:30AM - 11:00AM |
| Biology |
| PBPI: A High Performance Implementation of Bayesian Phylogenetic Inference |
| Xizhou Feng, Kirk W. Cameron, Duncan A. Buell |
| 22-23 |
| 10:30AM - 11:00AM |
| Imaging and Visual Analysis |
| Toward Real-Time, Image Guided Neurosurgery Using Distributed and Grid Computing |
| Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Peter Black, Olivier Clatz, Alexandra Golby, Ron Kikinis, Simon K. Warfield |
| 18-19 |
| 11:00AM - 11:30AM |
| Architecture |
| The Potential Energy Efficiency of Vector Acceleration |
| Christophe Lemuet, Jack Sampson, Jean-Francois Collard, Norm Jouppi |
| 20-21 |
| 11:00AM - 11:30AM |
| Biology |
| Locality and Parallelism Optimization for Dynamic Programming Algorithms in Bioinformatics |
| Guangming Tan, Ninghui Sun, Shengzhong Feng |
| 22-23 |
| 11:00AM - 11:30AM |
| Imaging and Visual Analysis |
| Large Image Correction and Warping in a Cluster Environment |
| Vijay S Kumar, Benjamin Rutt, Tahsin Kurc, Umit Catalyurek, Sunny Chow, Stephan Lamont, Maryann Martone, Joel Saltz |
| 18-19 |
| 11:30AM - 12:00PM |
| Architecture |
| The Design Space of Data-Parallel Memory Systems |
| Jung Ho Ahn, Mattan Erez, William J. Dally |
| 20-21 |
| 11:30AM - 12:00PM |
| Biology |
| Computing Large Sparse Multivariate Optimization Problems with an Application in Biophysics |
| Emre H Brookes, Rajendra V Boppana, Borries Demeler |
| 22-23 |
| 11:30AM - 12:00PM |
| Imaging and Visual Analysis |
| Detecting Distributed Scans Using High-Performance Query-Driven Visualization |
| Kurt Stockinger, E. Wes Bethel, Scott Campbell, Eli Dart, Kesheng Wu |
| 18-19 |
| 1:30PM - 2:00PM |
| Memory |
| Sequoia: Programming the Memory Hierarchy |
| Kayvon Fatahalian, Timothy J. Knight, Mike Houston, Mattan Erez, Daniel R. Horn, Larkhoon Leem, Ji Young Park, Manman Ren, Alex Aiken, William J. Dally, Pat Hanrahan |
| 20-21 |
| 1:30PM - 2:00PM |
| Molecular Dynamics |
| Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters |
| Kevin J. Bowers, Edmond Chow, Huafeng Xu, Ron O. Dror, Michael P. Eastwood, Brent A. Gregerson, John L. Klepeis, Istvan Kolossvary, Mark A. Moraes, Federico D. Sacerdoti, John K. Salmon, Yibing Shan, David E. Shaw |
| 22-23 |
| 1:30PM - 2:00PM |
| Scalable Systems Software |
| A Software Based Approach for Providing Network Fault Tolerance in Clusters Using the uDAPL Interface: MPI Level Design and Performance Evaluation |
| Abhinav Vishnu, Prachi Gupta, Amith Mamidala, Dhabaleswar Panda |
| 18-19 |
| 2:00PM - 2:30PM |
| Memory |
| CellSs: A Programming Model for the Cell BE Architecture |
| Pieter Bellens, Josep M. Perez, Rosa M. Badia, Jesus Labarta |
| 20-21 |
| 2:00PM - 2:30PM |
| Molecular Dynamics |
| Blue Matter: Approaching the Limits of Concurrency for Classical Molecular Dynamics |
| Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T.J. Christopher Ward, Mark E. Giampapa, Michael C. Pitman, Robert S. Germain |
| 22-23 |
| 2:00PM - 2:30PM |
| Scalable Systems Software |
| Problem Diagnosis in Large-Scale Computing Environments |
| Alexander V. Mirgorodskiy, Naoya Maruyama, Barton P. Miller |
| 18-19 |
| 2:30PM - 3:00PM |
| Memory |
| A Memory Model for Scientific Algorithms on Graphics Processors |
| Naga Govindaraju, Scott Larsen, Jim Gray, Dinesh Manocha |
| 20-21 |
| 2:30PM - 3:00PM |
| Molecular Dynamics |
| Preliminary Investigation of Advanced Electrostatics in Molecular Dynamics on Reconfigurable Computers |
| Ronald Scrofano, Viktor K. Prasanna |
| 22-23 |
| 2:30PM - 3:00PM |
| Scalable Systems Software |
| From Mesh Generation to Scientific Visualization: An End-to-End Approach to Parallel Supercomputing |
| Tiankai Tu, Hongfeng Yu, Leonardo Ramirez-Guzman, Jacobo Bielak, Omar Ghattas, Kwan-Liu Ma, David R. O'Hallaron |
| 18-19 |
| 3:30PM - 4:00PM |
| Interconnect Routing and Scheduling |
| Adaptive Routing in High-Radix Clos Networks |
| John Kim, William Dally, Dennis Abts |
| 20-21 |
| 3:30PM - 4:00PM |
| Particles and Continuum |
| Nested OpenMP for Efficient Computation of 3D Critical Points in Multi-Block CFD Datasets |
| Andreas Gerndt, Samuel Sarholz, Marc Wolter, Dieter an Mey, Christian Bischof, Torsten Kuhlen |
| 22-23 |
| 4:00PM - 4:30PM |
| Interconnect Routing and Scheduling |
| A Near-Optimal Real-time Hardware Scheduler for Large Cardinality Crossbar Switches |
| Raymond R. Hoare, Zhu Ding, Alex K. Jones |
| 20-21 |
| 4:00PM - 4:30PM |
| Particles and Continuum |
| Modeling Pulse Propagation and Scattering in a Dispersive Medium: Performance of MPI/OpenMP Hybrid Code |
| Robert O Rosenberg, Guy Norton, Jorge C Novarini, Wendell Anderson, Marco Lanzagorta |
| 22-23 |
| 4:30PM - 5:00PM |
| Interconnect Routing and Scheduling |
| Level-Wise Scheduling Algorithm for Fat Tree Interconnection Networks |
| Zhu Ding, Raymond R. Hoare, Alex K. Jones, Rami Melhem |
| 20-21 |
| 4:30PM - 5:00PM |
| Particles and Continuum |
| Performance Modeling and Optimization of a High Energy Colliding Beam Simulation Code |
| Hongzhang Shan, Erich Strohmaier, Ji Qiang, David H. Bailey, Kathy Yelick |
| 22-23 |
Wednesday, Nov 15 |
|
|
| 10:30AM - 11:00AM |
| Data Management and Query |
| Hypergraph Partitioning for Automatic Memory Hierarchy Management |
| Sriram Krishnamoorthy, Umit Catalyurek, Jarek Nieplocha, Atanas Rountev, P Sadayappan |
| 22-23 |
| 10:30AM - 11:00AM |
| Grid Allocation And Reservation |
| Improving Grid Resource Allocation via Integrated Selection and Binding |
| Yang-Suk Kee, Ken Yocum, Andrew A. Chien, Henri Casanova |
| 20-21 |
| 11:00AM - 11:30AM |
| Data Management and Query |
| Multiple Range Query Optimization with Distributed Cache Indexing |
| Beomseok Nam, Henrique Andrade, Alan Sussman |
| 22-23 |
| 11:00AM - 11:30AM |
| Grid Allocation And Reservation |
| Toward a Doctrine of Containment: Grid Hosting with Adaptive Resource Control |
| Lavanya Ramakrishnan, Laura Grit, Adriana Iamnitchi, David Irwin, Aydan Yumerefendi, Jeff Chase |
| 20-21 |
| 11:30AM - 12:00PM |
| Data Management and Query |
| Estimating Query Result Sizes for Proxy Caching in Scientific Database Federations |
| Tanu Malik, Randal Burns, Nitesh V Chawla, Alex Szalay |
| 22-23 |
| 11:30AM - 12:00PM |
| Grid Allocation And Reservation |
| Grid Capacity Planning with Negotiation-based Advance Reservation for Optimized QoS |
| Mumtaz Siddiqui, Alex Villazon, Thomas Fahringer |
| 20-21 |
| 1:30PM - 2:00PM |
| Grid Applications |
| Parallel Genomic Sequence-Searching on an Ad-Hoc Grid: Experiences, Lessons Learned, and Implications |
| Mark Gardner, Wu-chun Feng, Jeremy Archuleta, Heshan Lin, Xiaosong Ma |
| 20-21 |
| 1:30PM - 2:00PM |
| MPI and Communication |
| High-Performance and Scalable MPI over InfiniBand with Reduced Memory Usage: An In-Depth Performance Analysis |
| Sayantan Sur, Matthew J. Koop, Dhabaleswar K. Panda |
| 22-23 |
| 2:00PM - 2:30PM |
| Grid Applications |
| Sustainable Adaptive Grid Supercomputing: Multiscale Simulation of Semiconductor Processing across the Pacific |
| Hiroshi Takemiya, Yoshio Tanaka, Satoshi Sekiguchi, Shuji Ogata, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta |
| 20-21 |
| 2:00PM - 2:30PM |
| MPI and Communication |
| Adaptive, Transparent Frequency, and Voltage Scaling of Communication Phases in MPI Programs |
| Min Yeol Lim, Vincent W. Freeh, David K. Lowenthal |
| 22-23 |
| 2:30PM - 3:00PM |
| Grid Applications |
| High-Performance Dynamic Graphics Streaming for Scalable Adaptive Graphics Environment |
| Byungil Jeong, Luc Renambot, Ratko Jagodic, Rajvikram Singh, Julieta Aguilera, Andrew Johnson, Jason Leigh |
| 20-21 |
| 2:30PM - 3:00PM |
| MPI and Communication |
| Software Routing and Aggregation of Messages to Optimize the Performance of the HPCC Randomaccess Benchmark |
| Rahul Garg, Yogish Sabharwal |
| 22-23 |
Thursday, Nov 16 |
|
|
| 10:30AM - 11:00AM |
| Grid Networks and Portals |
| Revisiting Web Server Workload Invariants in the Context of Scientific Web Sites |
| Anne M Faber, Minaxi Gupta, Camilo H Viecco |
| 20-21 |
| 10:30AM - 11:00AM |
| Tools and Techniques for Performance |
| Architectures and APIs: Assessing Requirements for Delivering FPGA Performance to Applications |
| Keith Underwood, Scott Hemmert, Craig Ulmer |
| 22-23 |
| 11:00AM - 11:30AM |
| Grid Networks and Portals |
| End-System Aware, Rate-Adaptive Protocol for Network Transport in LambdaGrid Environments |
| Pallab Datta, Wu-chun Feng, Sushant Sharma |
| 20-21 |
| 11:00AM - 11:30AM |
| Tools and Techniques for Performance |
| Exploiting the Performance of 32-Bit Floating Point Arithmetic in Obtaining 64-Bit Accuracy |
| Julie Langou, Julien Langou, Piotr Luszczek, Jakub Kurzuk, Alfredo Buttari, Jack Dongarra |
| 22-23 |
| 11:30AM - 12:00PM |
| Grid Networks and Portals |
| Evaluating Grid Portal Security |
| David Del Vecchio, Victor Hazlewood, Marty Humphrey |
| 20-21 |
| 11:30AM - 12:00PM |
| Tools and Techniques for Performance |
| FFT Program Generation for Shared Memory: SMP and Multicore |
| Franz Franchetti, Yevgen Voronenko, Markus Pueschel |
| 22-23 |
| 1:30PM - 2:00PM |
| Blue Gene System Software |
| Topology Mapping for Blue Gene/L Supercomputer |
| Hao Yu, I-Hsin Chung, Jose Moreira |
| 22-23 |
| 1:30PM - 2:00PM |
| Grid Scheduling and Protocols |
| Supporting Dynamic Migration in Tightly Coupled Grid Applications |
| Liang Chen, Qian Zhu, Gagan Agrawal |
| 20-21 |
| 2:00PM - 2:30PM |
| Blue Gene System Software |
| Designing a Highly-Scalable Operating System: The Blue Gene/L Story |
| Jose Moreira, Michael Brutman, Jose Castanos, Tom Gooding, Todd Inglett, Derek Lieber, Pat McCarthy, Mike Mundy, Jeff Parker, Brian Wallenfelt, Mark Giampapa, Thomas Engelsiepen, Roger Haskin |
| 22-23 |
| 2:00PM - 2:30PM |
| Grid Scheduling and Protocols |
| Evaluation of a Workflow Scheduler Using Integrated Performance Modeling and Batch Queue Wait Time Prediction |
| Daniel Nurmi, Anirban Mandal, John Brevik, Chuck Koelbel, Rich Wolski, Ken Kennedy |
| 20-21 |
| 2:30PM - 3:00PM |
| Blue Gene System Software |
| Design and Implementation of a One-Sided Communication Interface for the IBM eServer Blue Gene Supercomputer |
| Michael Blocksome, Charles Archer, Todd Inglett, Pat McCarthy, Mike Mundy, Joe Ratterman, Albert Sidelnik, Brian Smith, Gheorghe Almasi, Jose Castanos, Derek Lieber, Jose Moreira, Sriram Krishnamoorthy, Vinod Tipparaju |
| 22-23 |
| 2:30PM - 3:00PM |
| Grid Scheduling and Protocols |
| Benchmarking XML Processors for Applications in Grid Web Services |
| Michael Head, Madhusudhan Govindaraju, Robert Engelen, Wei Zhang |
| 20-21 |
| 3:30PM - 4:00PM |
| Grid Resource Management |
| CRUSH: Controlled, Scalable, Decentralized Placement of Replicated Data |
| Sage A Weil, Scott A Brandt, Ethan L Miller, Carlos Maltzahn |
| 20-21 |
| 3:30PM - 4:00PM |
| MPI Tools and Performance Studies |
| MPI Performance Analysis Tools on Blue Gene/L |
| I-Hsin Chung, Robert E. Walkup, Hui-Fang Wen, Hao Yu |
| 22-23 |
| 4:00PM - 4:30PM |
| Grid Resource Management |
| CycleMeter: Detecting Fraudulent Peers in Internet Cycle Sharing |
| Zheng Zhang, Y. Charlie Hu, Samuel P. Midkiff |
| 20-21 |
| 4:00PM - 4:30PM |
| MPI Tools and Performance Studies |
| Quantifying the Potential Benefit of Overlapping Communication and Computation in Large-Scale Scientific Applications |
| Jose Carlos Sancho Pitarch, Kevin J. Barker, Darren J. Kerbyson, Kei Davis |
| 22-23 |
| 4:30PM - 5:00PM |
| Grid Resource Management |
| Designing a Runtime System for Volunteer Computing |
| David P. Anderson, Carl Christensen, Bruce Allen |
| 20-21 |
| 4:30PM - 5:00PM |
| MPI Tools and Performance Studies |
| Blocking vs. Non-Blocking Coordinated Checkpointing for Large-Scale Fault Tolerant MPI |
| Camille Coti, Thomas Herault, Pierre Lemarinier, Laurence Pilard, Ala Rezmerita, Eric Rodriguez, Franck Cappello |
| 22-23 |
|
|
Technical Papers
